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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_175520_180311_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
175520 - 180311
Intron Length:
4792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
ATATTTTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCATAT
U12 Branch Point Sequence:
CTGTGCATATTT
Flanking Amino Acid:
SHTSRSSPATLEMAIENLQK
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
69.2
41.7
Major BPS
59
0.23
1.2
55
42.7
Major PPT
79.9
0.67
0.8
78.6
35.1
Minor 5ss
42.7
-0.8
2.5
54.7
42.7
Minor BPS
44.7
-0.3
2.2
64.12
46.7

Associated Gene:

Gene:
RFX2
Ensembl Gene ID:
ENSAPLG00000004369
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022144
154282 - 185246
30965
ENSAPLT00000004524
155573 - 181887
26315