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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1760319_1761245_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1760319 - 1761245
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCCTTGTTGATT
Flanking Amino Acid:
VLFTIAAVLLGIILAFSLRP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.5
41.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.8
0.58
0.9
69
41
Minor 5ss
38.7
-1.3
3.1
51.6
45.2
Minor BPS
50.3
0.09
2.1
69.43
42.7

Associated Gene:

Gene:
SLC1A6
Ensembl Gene ID:
ENSAPLG00000010390
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030521
1749138 - 1777975
28838
ENSAPLT00000026194
1756037 - 1777975
21939
ENSAPLT00000022117
1737716 - 1771988
34273
ENSAPLT00000010859
1737716 - 1771515
33800