About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1761384_1762114_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1761384 - 1762114
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTGCCTACACA
Flanking Amino Acid:
LPLIVSSLITGMASLDGRAS
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.7
0.56
0.9
69.2
36
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
55
0.15
2.2
74.7
43.3

Associated Gene:

Gene:
SLC1A6
Ensembl Gene ID:
ENSAPLG00000010390
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010859
1737716 - 1771515
33800
ENSAPLT00000030521
1749138 - 1777975
28838
ENSAPLT00000026194
1756037 - 1777975
21939
ENSAPLT00000022117
1737716 - 1771988
34273