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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1762320_1763264_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1762320 - 1763264
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CTTGTTTTATCT
Flanking Amino Acid:
QTTDAFMDLVRNMFPPNLVE
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.3
0.68
0.9
74.8
34.5
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
57
0.3
1.7
74.38
43.4

Associated Gene:

Gene:
SLC1A6
Ensembl Gene ID:
ENSAPLG00000010390
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026194
1756037 - 1777975
21939
ENSAPLT00000022117
1737716 - 1771988
34273
ENSAPLT00000010859
1737716 - 1771515
33800
ENSAPLT00000030521
1749138 - 1777975
28838