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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1763308_1764841_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1763308 - 1764841
Intron Length:
1534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CATCTGATAATC
Flanking Amino Acid:
PNLVEACFKQYKTQYSTRVF
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
78.3
0.64
0.9
74.5
40
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
43.1
-0.5
2.2
53.23
38.6

Associated Gene:

Gene:
SLC1A6
Ensembl Gene ID:
ENSAPLG00000010390
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022117
1737716 - 1771988
34273
ENSAPLT00000010859
1737716 - 1771515
33800
ENSAPLT00000030521
1749138 - 1777975
28838
ENSAPLT00000026194
1756037 - 1777975
21939