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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1768027_1769042_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1768027 - 1769042
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGATGG
5'SS Class:
major
3'SS Sequence:
AAATTCCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGTTTTGTAAAT
Flanking Amino Acid:
ALITALGTSSSSATLPITFR
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
63.6
43.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
75.3
0.57
0.9
71
39.8
Minor 5ss
36.3
-1.6
3.2
47.6
47.8
Minor BPS
53.8
0.2
2.1
77.19
39.4

Associated Gene:

Gene:
SLC1A6
Ensembl Gene ID:
ENSAPLG00000010390
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030521
1749138 - 1777975
28838
ENSAPLT00000026194
1756037 - 1777975
21939
ENSAPLT00000022117
1737716 - 1771988
34273
ENSAPLT00000010859
1737716 - 1771515
33800