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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1771421_1771929_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1771421 - 1771929
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTCTG
5'SS Class:
major
3'SS Sequence:
CTCCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
ATTGCCATGATG
Flanking Amino Acid:
HELDAQDCELGNSCRAAKPL
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67.3
43.6
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
82
0.72
0.7
76.6
25.5
Minor 5ss
38
-1.3
3
47.3
42.4
Minor BPS
51.8
-0
1.8
61.58
40.6

Associated Gene:

Gene:
SLC1A6
Ensembl Gene ID:
ENSAPLG00000010390
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022117
1737716 - 1771988
34273