Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1790179_1791706_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1790179 - 1791706

Intron Length:

1528

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGCAG

5'SS Class:

major

3'SS Sequence:

ATCTGTTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAC

U12 Branch Point Sequence:

GCCCTCTTCACT

Flanking Amino Acid:

GMDDVKKRILEFIAVSQLRG

Intron Amino Acid Position:

232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

62.2

43.7

Major BPS

77.5

0.68

79.6

Major PPT

74.4

0.55

41.3

Minor 5ss

30.2

-2.3

3.2

35.3

42.3

Minor BPS

51.5

0.13

1.8

65.22

45.3

Associated Gene:

Gene:

LONP1

Ensembl Gene ID:

ENSAPLG00000010693

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011190

1784175 - 1799438

15264