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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1795057_1795742_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1795057 - 1795742
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTATGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
GCTTAATGAAAT
Flanking Amino Acid:
YLDVPVDLSKVLFICTANVT
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
67.7
0.44
1
58
38.9
Major PPT
78
0.63
1
73.7
41.7
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
46.5
-0.1
2
65.81
43.6

Associated Gene:

Gene:
LONP1
Ensembl Gene ID:
ENSAPLG00000010693
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011190
1784175 - 1799438
15264