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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1795860_1796158_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1795860 - 1796158
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TGATCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
ATGTGCTGAATG
Flanking Amino Acid:
VAEEKLAIAERYLVPQARVL
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
80.7
0.69
0.9
77.6
36.5
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
50.2
-0.1
2
58.45
43.6

Associated Gene:

Gene:
LONP1
Ensembl Gene ID:
ENSAPLG00000010693
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011190
1784175 - 1799438
15264