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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1796551_1797706_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1796551 - 1797706
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TCTTTCAGAATG
Flanking Amino Acid:
VVMGLAWTAMGGSTLFVETS
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.9
35.3
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
84.3
0.77
0.7
84.8
30
Minor 5ss
35.9
-1.6
3.6
48.1
47.5
Minor BPS
50.4
-0.1
1.8
60.59
41.6

Associated Gene:

Gene:
LONP1
Ensembl Gene ID:
ENSAPLG00000010693
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011190
1784175 - 1799438
15264