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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1797916_1798270_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1797916 - 1798270
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
SSHIHLHVPEGATPKDGPSA
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.8
40.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
80.9
0.69
1
82.2
33.3
Minor 5ss
43.3
-0.7
2.9
56.8
47.3
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
LONP1
Ensembl Gene ID:
ENSAPLG00000010693
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011190
1784175 - 1799438
15264