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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1798436_1799114_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1798436 - 1799114
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAA
U12 Branch Point Sequence:
GACTGCATAATT
Flanking Amino Acid:
VGGIKEKTIAAKRAGVTCII
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.9
36.6
Major BPS
59.8
0.24
1.2
61.9
33.9
Major PPT
81.8
0.72
0.7
77.6
24.5
Minor 5ss
33.6
-1.9
3.5
49.7
46.1
Minor BPS
49
0
2
66.78
43.9

Associated Gene:

Gene:
LONP1
Ensembl Gene ID:
ENSAPLG00000010693
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011190
1784175 - 1799438
15264