Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1802036_1802535_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1802036 - 1802535

Intron Length:

500

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGTCAA

5'SS Class:

major

3'SS Sequence:

CTTGTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

GCTGACTGTACT

Flanking Amino Acid:

KRALKFIKKRVGTHIRAKRK

Intron Amino Acid Position:

157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

1.1

42.7

Major BPS

66.3

0.4

1.1

41.8

Major PPT

0.74

0.8

77.2

31.6

Minor 5ss

31.7

-2.1

3.1

31.8

42.6

Minor BPS

45.1

-0.3

2.1

62.66

46.6

Associated Gene:

Gene:

RPL36

Ensembl Gene ID:

ENSAPLG00000018797

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025479

1801894 - 1805201

3308