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Intron Name: Anas_platyrhynchos_platyrhynchos_29_180577_181282_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

180577 - 181282

Intron Length:

706

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGAGTC

5'SS Class:

strong_major

3'SS Sequence:

GTTCCGTTGATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAC

U12 Branch Point Sequence:

GTTCCGTTGATA

Flanking Amino Acid:

GGEAVYTNGTIRAAYSYNTE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

75.4

32.7

Major BPS

0.55

71.8

31.4

Major PPT

65.3

0.34

60.9

40.3

Minor 5ss

37.4

-1.4

3.6

55.3

42.3

Minor BPS

53.4

0.1

2.1

68.6

37.7

Associated Gene:

Gene:

RFX2

Ensembl Gene ID:

ENSAPLG00000004369

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022144

154282 - 185246

30965

ENSAPLT00000004524

155573 - 181887

26315

ENSAPLT00000025872

153664 - 185246

31583