About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_18203_22736_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18203 - 22736
Intron Length:
4534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAGGCTTTAAAT
Flanking Amino Acid:
EEERIKARKERAEDKQDMAE
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
62.9
0.48
1.5
74.11
42.7

Associated Gene:

Gene:
ATCAY
Ensembl Gene ID:
ENSAPLG00000004775
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004927
17024 - 31995
14972