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Intron Name: Anas_platyrhynchos_platyrhynchos_29_182458_185111_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

182458 - 185111

Intron Length:

2654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGTAT

5'SS Class:

major

3'SS Sequence:

CTTCTTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TGTGTGTTAATG

Flanking Amino Acid:

VVQPVPASQQRVLVQAAGSA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

1.1

75.6

36.7

Major BPS

84.4

0.85

34.5

Major PPT

0.9

0.6

88.2

21.5

Minor 5ss

43.9

-0.7

3.3

64.1

47.4

Minor BPS

-0.2

2.2

58.97

43.6

Associated Gene:

Gene:

RFX2

Ensembl Gene ID:

ENSAPLG00000004369

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025872

153664 - 185246

31583

ENSAPLT00000022144

154282 - 185246

30965