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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1834727_1836031_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1834727 - 1836031
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATCA
5'SS Class:
major
3'SS Sequence:
ATTTTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
LDFRKNVFEEEIRETRKRHE
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
65.9
33.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.8
0.8
81.9
34.2
Minor 5ss
44.4
-0.6
2.7
57.7
46.4
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
LMNB2
Ensembl Gene ID:
ENSAPLG00000011044
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011558
1818452 - 1844580
26129