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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1836203_1838773_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1836203 - 1838773
Intron Length:
2571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
ACTTGCCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTTATAAAACT
Flanking Amino Acid:
LELEQTYQAKLENAKLASDQ
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
76.5
0.6
0.9
66.2
40.2
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
52.7
0.16
2.1
81.76
39.7

Associated Gene:

Gene:
LMNB2
Ensembl Gene ID:
ENSAPLG00000011044
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011558
1818452 - 1844580
26129