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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1838900_1839114_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1838900 - 1839114
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAAG
5'SS Class:
major
3'SS Sequence:
ACTGTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTTTCTGTTATA
Flanking Amino Acid:
SYQLSGLQKQASAAEDRIHE
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
66.7
38.5
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
67.4
0.39
0.9
58.8
37.7
Minor 5ss
38.3
-1.3
2.9
48
47.7
Minor BPS
52.6
0.08
2.3
74.49
37.5

Associated Gene:

Gene:
LMNB2
Ensembl Gene ID:
ENSAPLG00000011044
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011558
1818452 - 1844580
26129