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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1839336_1839956_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1839336 - 1839956
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAATAAAA
Flanking Amino Acid:
YRKLLEGEEERLKLSPSPSS
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73.9
0.54
1
73
41.9
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
55.5
0.17
2
74.02
36.4

Associated Gene:

Gene:
LMNB2
Ensembl Gene ID:
ENSAPLG00000011044
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011558
1818452 - 1844580
26129