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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1851441_1851570_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1851441 - 1851570
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCGCCTCTCACG
Flanking Amino Acid:
AVANAQELLQRMTDKCFRKC
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
77.7
0.62
0.7
72.4
25.7
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
41.2
-0.8
2
40.53
44

Associated Gene:

Gene:
TIMM13
Ensembl Gene ID:
ENSAPLG00000016799
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037814
1851303 - 1851851
549