About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1851640_1851752_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1851640 - 1851752
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
PGGSLDNSEQKCIAMCMDRY
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.7
0.78
0.8
80.9
31.1
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
TIMM13
Ensembl Gene ID:
ENSAPLG00000016799
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037814
1851303 - 1851851
549