Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1855108_1855638_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1855108 - 1855638

Intron Length:

531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACTGGCT

5'SS Class:

major

3'SS Sequence:

CTTTCCTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTAAC

U12 Branch Point Sequence:

ACCAAGTTAACA

Flanking Amino Acid:

ITGWGSTKEGGLMSKDLQKA

Intron Amino Acid Position:

1016

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.2

0.48

1.1

63.5

40.9

Major BPS

65.7

0.39

1.1

67.4

36.7

Major PPT

82.8

0.74

0.7

80.9

24.2

Minor 5ss

30.9

-2.2

3.7

48.2

47.4

Minor BPS

45.8

-0.3

2.2

55.19

43.5

Associated Gene:

Gene:

TMPRSS9

Ensembl Gene ID:

ENSAPLG00000011476

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011964

1854114 - 1868165

14052