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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1855905_1856214_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1855905 - 1856214
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GTGCTCCTAACG
Flanking Amino Acid:
WLLSAAHCFDIYSDPKMWVA
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
72
0.55
1
71.8
31.4
Major PPT
85.9
0.81
0.8
80.9
31.1
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
51.5
-0
1.8
58.19
43.1

Associated Gene:

Gene:
TMPRSS9
Ensembl Gene ID:
ENSAPLG00000011476
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011964
1854114 - 1868165
14052