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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1857100_1857197_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1857100 - 1857197
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTC
5'SS Class:
strong_major
3'SS Sequence:
TATTGCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
AGGTACTAAGCA
Flanking Amino Acid:
TEPAKPTQTPVVPCTSFTFR
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
75.7
32.1
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
80
0.68
0.9
70.3
40.9
Minor 5ss
34.3
-1.8
3.6
49.9
46.6
Minor BPS
45.5
-0.3
2
55.65
43

Associated Gene:

Gene:
TMPRSS9
Ensembl Gene ID:
ENSAPLG00000011476
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011964
1854114 - 1868165
14052