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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1857559_1858067_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1857559 - 1858067
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGCCAC
U12 Branch Point Sequence:
GTGGGCTGAGCA
Flanking Amino Acid:
FLEGKIDSCQGDSGGPLACE
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
42.9
-0.4
1.2
45.5
37.5
Major PPT
83.5
0.75
0.8
80.8
31.2
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
42.8
-0.5
2.1
52.8
45.1

Associated Gene:

Gene:
TMPRSS9
Ensembl Gene ID:
ENSAPLG00000011476
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011964
1854114 - 1868165
14052