About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1858855_1859846_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1858855 - 1859846
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGAGTT
5'SS Class:
major
3'SS Sequence:
TATGTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TATGTATTTACA
Flanking Amino Acid:
WLLSAAHCFNETDPEEIEAY
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
72.7
37.1
Major BPS
66.4
0.41
1
61.3
37
Major PPT
80.3
0.68
0.9
73.3
40.8
Minor 5ss
37.6
-1.4
3.6
52.9
44.9
Minor BPS
48.7
-0.1
2
65.04
41.3

Associated Gene:

Gene:
TMPRSS9
Ensembl Gene ID:
ENSAPLG00000011476
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011964
1854114 - 1868165
14052