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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1863354_1864300_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1863354 - 1864300
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GGATCCTGATGC
Flanking Amino Acid:
CSDASDEKGCDCGSRPAMQT
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.2
39.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.2
0.68
0.7
77
25
Minor 5ss
30.5
-2.2
2.8
37.9
39.5
Minor BPS
45.7
-0.3
2
54.08
43

Associated Gene:

Gene:
TMPRSS9
Ensembl Gene ID:
ENSAPLG00000011476
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011964
1854114 - 1868165
14052