About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1866531_1867025_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1866531 - 1867025
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGACCAT
U12 Branch Point Sequence:
AGTGTGTGACCA
Flanking Amino Acid:
RVLTPALERLFLSSFQDSQL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
50.4
0.01
1.4
60.8
45.4
Major PPT
83.5
0.75
0.8
77.1
31.6
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
39.6
-0.7
2.2
50.51
40.9

Associated Gene:

Gene:
TMPRSS9
Ensembl Gene ID:
ENSAPLG00000011476
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011964
1854114 - 1868165
14052