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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1867154_1868032_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1867154 - 1868032
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTGTCTCTAACA
Flanking Amino Acid:
VMALYMGILLACHPVGETSF
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
71.8
0.49
0.9
68.1
32
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
63.8
0.43
1.7
72.8
39.1

Associated Gene:

Gene:
TMPRSS9
Ensembl Gene ID:
ENSAPLG00000011476
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011964
1854114 - 1868165
14052