About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1886602_1888023_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1886602 - 1888023
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAATACC
5'SS Class:
major
3'SS Sequence:
CTTCCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTTCTTCATT
Flanking Amino Acid:
AMFWTGSGFAKDLPQPPLVI
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
68.6
36.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.9
0.74
0.8
76.9
30.4
Minor 5ss
31.4
-2.1
2.7
38.5
39.5
Minor BPS
68.7
0.67
1.7
85.57
35

Associated Gene:

Gene:
SPPL2B
Ensembl Gene ID:
ENSAPLG00000011803
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012324
1886314 - 1906184
19871