About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1892521_1892652_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1892521 - 1892652
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TGATTCAAAACT
Flanking Amino Acid:
FVFITPFLTKTGESIMVEVA
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
52.4
0.15
1.9
74.33
42

Associated Gene:

Gene:
SPPL2B
Ensembl Gene ID:
ENSAPLG00000011803
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012324
1886314 - 1906184
19871