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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1892728_1893527_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1892728 - 1893527
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TAGTATATAAAT
Flanking Amino Acid:
LKTIRLPTFKGCTLLLLVLF
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.1
40.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
85.3
0.79
0.8
77.4
36.9
Minor 5ss
42
-0.9
3.1
56.4
48
Minor BPS
48.7
-0
1.9
68.64
41.6

Associated Gene:

Gene:
SPPL2B
Ensembl Gene ID:
ENSAPLG00000011803
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012324
1886314 - 1906184
19871