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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1893610_1894295_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1893610 - 1894295
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AAAATATAAATT
Flanking Amino Acid:
VVWGIFRNEDQWAWVLQDAL
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
82.8
0.74
0.6
81.5
23.5
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
44.8
-0.3
1.8
58.16
38.5

Associated Gene:

Gene:
SPPL2B
Ensembl Gene ID:
ENSAPLG00000011803
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012324
1886314 - 1906184
19871