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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1895612_1896384_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1895612 - 1896384
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTACTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
ATAGCCATATTA
Flanking Amino Acid:
GYWAGSRDVKKRYMKHKRDD
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
81.6
0.71
0.8
78
35.6
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
47.2
-0.2
1.9
59.55
40.4

Associated Gene:

Gene:
SPPL2B
Ensembl Gene ID:
ENSAPLG00000011803
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012324
1886314 - 1906184
19871