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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1906411_1906627_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1906411 - 1906627
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TCCGCTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TCCTCTTTAACC
Flanking Amino Acid:
GGGGGAGKMADKEKKKKESI
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.8
45.3
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
67.4
0.39
0.9
61.4
35
Minor 5ss
26.7
-2.7
3
31.4
42.5
Minor BPS
78.4
0.87
1.2
77.59
39

Associated Gene:

Gene:
LSM7
Ensembl Gene ID:
ENSAPLG00000020930
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045019
1906205 - 1909443
3239