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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1924306_1926730_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1924306 - 1926730
Intron Length:
2425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ACTAACTCATCT
Flanking Amino Acid:
ISSRLVIFPLITYYYFVTKF
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
76.5
27.8
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
77.8
0.62
0.7
72
26.2
Minor 5ss
37.5
-1.4
2.9
48
41.4
Minor BPS
46.2
-0.2
2
64.73
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022757
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039696
1923397 - 1933756
10360