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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1926838_1927131_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1926838 - 1927131
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TGTCTCTCTACA
Flanking Amino Acid:
VHDASDYILELAKMLHYMKW
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
82.9
0.74
0.8
76.7
32.1
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
49.7
-0
1.9
65.87
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022757
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039696
1923397 - 1933756
10360