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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1927261_1927823_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1927261 - 1927823
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCATACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTCTCATACCA
Flanking Amino Acid:
ATLPFDVKRKDFKEQIIHHI
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.3
0.55
0.9
67.3
37.8
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
49
-0
1.9
65.12
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022757
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039696
1923397 - 1933756
10360