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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1928735_1929220_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1928735 - 1929220
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GGGTTCTTACTG
Flanking Amino Acid:
FFSALALLYDKPWFWDHTVC
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.9
0.65
0.9
75.1
33.3
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
50
-0.1
1.7
51.99
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022757
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039696
1923397 - 1933756
10360