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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1929279_1929776_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1929279 - 1929776
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAATT
Flanking Amino Acid:
PRLMKKFCEASWRFIFYFTS
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.3
0.7
0.8
79.4
32.7
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
65.2
0.55
1.5
79.05
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022757
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039696
1923397 - 1933756
10360