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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1936259_1937488_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
1936259 - 1937488
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCGT
5'SS Class:
major
3'SS Sequence:
TCACTCCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCTATTTTCACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
65.5
45.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.2
0.37
0.9
59.6
36.6
Minor 5ss
39.7
-1.2
3.1
57.3
46.7
Minor BPS
50.2
0.09
1.8
67.12
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012475
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013036
1936064 - 1988834
52771