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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1938416_1942521_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1938416 - 1942521
Intron Length:
4106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGAATC
5'SS Class:
major
3'SS Sequence:
CATATTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTTACA
Flanking Amino Acid:
MVYKFILQGTMEKDMRSDTE
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
72
37.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.3
0.59
0.8
74
36.3
Minor 5ss
44.6
-0.6
2.9
61.9
42.7
Minor BPS
62.6
0.39
1.9
76.8
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012475
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013036
1936064 - 1988834
52771