About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1943591_1944204_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1943591 - 1944204
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGTAT
U12 Branch Point Sequence:
CCTTTCTCATCA
Flanking Amino Acid:
FTLPCDVKRKDFKEQIVHHA
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
54.9
0.12
1.4
55.4
41.7
Major PPT
78.6
0.64
0.8
78
29.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
50.5
0.01
1.8
62.59
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012475
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013036
1936064 - 1988834
52771