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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1946940_1949288_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1946940 - 1949288
Intron Length:
2349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TCTTTGTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
ACTAACACACTT
Flanking Amino Acid:
PSLSKKFCEACWRFTFYVIA
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
84.7
0.78
0.8
80.6
31.5
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
38.2
-0.8
2
53.42
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012475
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013036
1936064 - 1988834
52771