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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1949408_1955178_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1949408 - 1955178
Intron Length:
5771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GCCTGTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TGAATCTGAACC
Flanking Amino Acid:
YSTHCKNPKESELISLAKQC
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
77.5
0.62
0.9
68.2
42.3
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
58.8
0.26
1.5
65.9
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012475
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013036
1936064 - 1988834
52771