Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1955297_1973038_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1955297 - 1973038

Intron Length:

17742

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTGAAT

U12 Branch Point Sequence:

TGAACCTTGAAT

Flanking Amino Acid:

ILVVIRYIFERAIALPLGAK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.13

0.6

93.1

14.6

Major BPS

62.3

0.31

1.4

73.3

39.1

Major PPT

93.2

0.97

0.6

88.8

20.4

Minor 5ss

41.9

-0.9

2.9

57.8

46.8

Minor BPS

62.8

0.48

1.5

75.22

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012475

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013036

1936064 - 1988834

52771