About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2074104_2076935_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2074104 - 2076935
Intron Length:
2832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
TCTTTGCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCTT
U12 Branch Point Sequence:
TTTCTCTTTCCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
81.2
0.7
0.8
73.5
37.1
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
44.8
-0.3
3.6
81.17
40.3

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031152
2073582 - 2188251
114670
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670
ENSAPLT00000037920
2073582 - 2188251
114670