About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2147145_2147819_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2147145 - 2147819
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGAAA
U12 Branch Point Sequence:
CGTTCTTGGAAA
Flanking Amino Acid:
TPEMCPVRGSDEYRRLCIEG
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
50.3
0.01
1.5
61.7
43.1
Major PPT
79.5
0.66
1
76.9
42.1
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
49.8
-0
1.6
60.73
39.1

Associated Gene:

Gene:
FBN3
Ensembl Gene ID:
ENSAPLG00000007523
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031152
2073582 - 2188251
114670
ENSAPLT00000030104
2072434 - 2188251
115818
ENSAPLT00000007979
2073582 - 2188251
114670
ENSAPLT00000046331
2073582 - 2188251
114670